Type: Package
Package: umiAnalyzer
Title: Tools for Analyzing Sequencing Data with Unique Molecular
        Identifiers
Version: 1.0.0
Date: 2021-11-23
Authors@R: c(
    person("Stefan", "Filges", , "stefan.filges@gu.se", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-5994-6699")),
    person("Gustav", "Johansson", , "gustav.johansson@gu.se", role = "ctb")
  )
Maintainer: Stefan Filges <stefan.filges@gu.se>
Description: Tools for analyzing sequencing data containing unique
        molecular identifiers generated by 'UMIErrorCorrect'
        (<https://github.com/stahlberggroup/umierrorcorrect>).
License: GPL-3
URL: https://github.com/sfilges/umiAnalyzer
BugReports: https://github.com/sfilges/umiAnalyzer/issues
Depends: R (>= 4.1.0)
Imports: BiocManager, dplyr (>= 0.7.5), DT (>= 0.19), forcats (>=
        0.5.0), ggplot2 (>= 2.2.1), graphics, grDevices, gridExtra (>=
        2.3), magrittr (>= 1.5), methods, pheatmap (>= 1.0.12), plotly
        (>= 4.9.2.1), readr (>= 1.1.1), Rsamtools (>= 1.32.3), scales
        (>= 1.1.0), shiny (>= 1.7.1), shinydashboard (>= 0.7.2),
        shinyFiles (>= 0.9.0), shinyWidgets (>= 0.6.2), stats, stringr
        (>= 1.4.0), tibble (>= 1.4.2), tidyr (>= 0.8.1), utils, viridis
        (>= 0.5.1)
Suggests: testthat (>= 3.0.0), knitr (>= 1.27), rmarkdown (>= 2.1)
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.1.2
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libuv1-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://sfilges.r-universe.dev
Date/Publication: 2021-11-25 11:29:34 UTC
RemoteUrl: https://github.com/sfilges/umianalyzer
RemoteRef: HEAD
RemoteSha: e1d7bb20cf612f8863aa1066ab2994191a8a2323
NeedsCompilation: no
Packaged: 2026-09-30 08:00:13 UTC; root
Author: Stefan Filges [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5994-6699>),
  Gustav Johansson [ctb]